#!/bin/bash
corrdump.exe -2=0.8 -clus -nop -noe -ro -l=rndstr.in
(echo 1 ; cat ../supcel.in) > sqscell.out
mcsqs -rc -n=32
if [[ ! -e bestsqs.in ]]
then
    mv bestsqs.out bestsqs.in
fi
cellcvrt.exe -uss=../supcel.in < bestsqs.in  | cellcvrt.exe -ja=0.05 > bestsqs.out