138 lines
4.6 KiB
Markdown
138 lines
4.6 KiB
Markdown
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# Articles
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## Wave Optics
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Fourier Modal Method:
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- <https://github.com/facebookresearch/fmmax>
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## FDTD
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<https://github.com/flaport/fdtd>
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## Maxwell-Bloch
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<https://maxwellbloch.readthedocs.io/en/stable/>
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## Diffraction
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<https://rafael-fuente.github.io/simulating-diffraction-patterns-with-the-angular-spectrum-method-and-python.html>
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## Chiroptical Properties
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**Chiroptical Properties Overview**
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- <https://www.nature.com/articles/s41377-020-00367-8>
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- *Also PDF*.
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Circular Dichroism Spectroscopy
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- <https://chem.libretexts.org/Bookshelves/Analytical_Chemistry/Physical_Methods_in_Chemistry_and_Nano_Science_(Barron)/07%3A_Molecular_and_Solid_State_Structure/7.07%3A_Circular_Dichroism_Spectroscopy_and_its_Application_for_Determination_of_Secondary_Structure_of_Optically_Active_Species>
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Absolute Configuration
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- Spatial arrangement of atoms within a chiral molecular entity
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- <https://en.wikipedia.org/wiki/Absolute_configuration>
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Optical Rotary Dispersion
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- Variation in the optical rotation of a substance with a change in the wavelength of light.
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- <https://en.wikipedia.org/wiki/Optical_rotatory_dispersion>
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## Molecular Dynamics related to Varying Chiral Responses to EM Fields
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Perspectives on external electric fields in molecular simulation: progress, prospects and challenges
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- General overview of molecular simulation type stuff.
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- Brings me to *English et al.* article.
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- <https://pubs.rsc.org/en/content/articlehtml/2015/cp/c5cp00629e#cit62>
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Coupling of translational and rotational motion in chiral liquids in electromagnetic and circularly polarised electric fields
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- <https://pubmed.ncbi.nlm.nih.gov/22401453/>
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## General PDE Learning
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Intro to Maxwell PDE Solutions
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- Slides: <https://cmpp.readthedocs.io/en/latest/_static/lec3-2021.pdf>
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## FEM Tool Aggregators
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Resume of This Guy:
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- <https://mbarzegary.github.io/whatiuse/>
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Blog Post of This Guy:
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- <https://www.matecdev.com/posts/differences-fdtd-fem-mom.html>
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Differentiable Solvers (fluid-focused):
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- <https://danmackinlay.name/notebook/pde_solvers_diff.html#phiflow>
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Survey of Julia-Based PDE Solvers:
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- <https://github.com/JuliaPDE/SurveyofPDEPackages>
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## Geometry Tools
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pygmsh
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- Nice abstraction on top of `gmsh`.
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- PyPi: <https://pypi.org/project/pygmsh/>
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## FEM Learning
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Wikipedia: <https://en.wikipedia.org/wiki/Finite_element_method>
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Finite Element Encyclopedia
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- Home: <https://defelement.com/>
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- Nedelec: <https://defelement.com/elements/nedelec1.html>
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Introduction to FEM for Maxwell
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- <https://www.math.uci.edu/~chenlong/226/FEMMaxwell.pdf>
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## FEM Solvers
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COMSOL
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- **NOT Open Source**. Pedatory license.
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- General-purpose PDE solver.
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- Limited Python Interface: <https://mph.readthedocs.io/en/stable/installation.html>
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FEniCS
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- **NO GPU**
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- Extremely advanced Python muliphysics solver.
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- Project: <https://fenicsproject.org/>
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- Sphere EM Scattering: <https://docs.fenicsproject.org/dolfinx/v0.7.2/python/demos/demo_axis.html>
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- Finite Elements for Maxwell Solvers: <https://fenicsproject.org/olddocs/dolfin/2018.1.0/python/demos/maxwell-eigenvalues/demo_maxwell-eigenvalues.py.html>
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- Maxwell Eigenvalue FEM Solver: <https://github.com/gamstc/fenics_maxwell/blob/master/maxwell_eigs_simple.py>
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- JAX Integration for Autograd: <https://github.com/IvanYashchuk/jax-fenics>
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- Tutorial: <https://jsdokken.com/dolfinx-tutorial/chapter3/em.html>
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- Multiphysics Models in FEniCS: <https://www.sciencedirect.com/science/article/pii/S266709922300004X#sec0020>
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- Gallery of FEM Solvers: <https://fenicsproject.org/pub/tutorial/sphinx1/._ftut1004.html>
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- The FEniCS Tutorial Volume 1: <https://fenicsproject.org/pub/tutorial/sphinx1/>
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FreeFEM:
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- Domain-specific C++-like language
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- Documentation: <https://doc.freefem.org/introduction/index.html>
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- <https://freefem.org/>
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Elmer:
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- Project: <https://www.elmerfem.org/blog/>
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- Models: <https://www.nic.funet.fi/pub/sci/physics/elmer/doc/ElmerModelsManual.pdf>
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- Python Interface: <https://pypi.org/project/pyelmer/>
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- Docker: <https://hub.docker.com/r/nwrichmond/elmerice/>
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jax-fem:
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- Doesn't seem to do much (if any) wave stuff.
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- Repo: <https://github.com/tianjuxue/jax-fem>
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- Paper: <https://www.sciencedirect.com/science/article/pii/S0010465523001479#kws0010>
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- Sister Project for Additive Manufacturing: <https://github.com/tianjuxue/jax-am>
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deal.II:
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- A crazy C++ library.
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- <https://www.dealii.org/>
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## Julia FEM Solvers
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BEAST:
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- <https://github.com/krcools/BEAST.jl>
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## FEM Fluid Solvers
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<https://github.com/tum-pbs/PhiFlow>
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## FEM Theory
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Matrix-Free FEM Solver
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- Paper: <https://www.iitg.ac.in/dsharma/papers/journal/2020_EBE_SYM_FEA.pdf>
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## Topological Optimization
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FreeFEM-based Topology Optimization
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- Paper: <https://link.springer.com/article/10.1007/s00158-023-03529-5#Sec7>
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